AzimuthAPI

Version 1.0.0

An R package providing an interface to the Pan-human Azimuth neural network, enabling users to run cell type annotation on single-cell and spatial transcriptomics data.

Tip

For more details, including an introductory vignette & function reference, visit https://satijalab.org/pan_human_azimuth.

Two options for annotation are available:

• CloudAzimuth - computation occurs on the cloud; requires no additional setup.
• ANNotate - computation occurs entirely locally in R via reticulate; requires a conda environment with panhumanpy installed.

Installation

if (!requireNamespace("remotes", quietly = TRUE)) {
  install.packages("remotes") 
}

# Install AzimuthAPI from GitHub
remotes::install_github("satijalab/AzimuthAPI")