Search results

very short proteins are skipped in foldseek easy-clsuter?

Status: Open.

#589 In steineggerlab/foldseek;

· Huilin-Li opened on Jun 14, 2026

Discrepancy in structural search results due to database-size dependent E-value filtering

Status: Open.

#585 In steineggerlab/foldseek;

· luisbustom-oss opened on May 8, 2026

easy-multimercluster crashes with munmap_chunk(): invalid pointer on mixed-chain-count inputs (regression after v10)

Status: Open.

#584 In steineggerlab/foldseek;

· bviggiano opened on May 7, 2026

Creating a DB using ProstT5 and querying with a pdb file

Status: Open.

#583 In steineggerlab/foldseek;

· draperbarr opened on Apr 29, 2026

Question about the exact pipeline & params used for AFDB v6 clustering

Status: Open.

#582 In steineggerlab/foldseek;

· yzy-pg opened on Apr 26, 2026

conda version does not support interfacelddt as output field

Status: Open.

#580 In steineggerlab/foldseek;

· maven2306 opened on Apr 22, 2026

Foldseek for pairwise structural alignment

Status: Open.

#578 In steineggerlab/foldseek;

· mohammadian-reza opened on Mar 22, 2026

Why are the results so different between CPU and GPU?

Status: Open.

#577 In steineggerlab/foldseek;

· zhulab-yyf opened on Mar 22, 2026

--chainmap option for predefined chain-to-chain mapping of query and reference

Status: Open.

#575 In steineggerlab/foldseek;

· omgol411 opened on Mar 12, 2026

Reduced hits in v9 vs v8 and AFDB50 download EOF error

Status: Open.

#574 In steineggerlab/foldseek;

· gioodm opened on Mar 10, 2026

output fasta of easy-cluster providing inconsistent sequences

Status: Open.

#569 In steineggerlab/foldseek;

· jmoojun opened on Mar 6, 2026

easy-multimersearch returns empty results for homo-oligomeric complexes with chain count mismatch

Status: Open.

#568 In steineggerlab/foldseek;

· mf-rug opened on Mar 4, 2026