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Switch node fill aesthetic and replace Rgraphviz with improved Sugiyama layout#33

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jhollway with Copilot wants to merge 9 commits into
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copilot/update-fill-argument-in-ggplot
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Switch node fill aesthetic and replace Rgraphviz with improved Sugiyama layout#33
jhollway with Copilot wants to merge 9 commits into
mainfrom
copilot/update-fill-argument-in-ggplot

Add clarifying comment for 0-based layer indexing

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