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Merged
jhollway merged 2 commits into from
Feb 27, 2026
Merged

v0.6.0 #35

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Initial plan
Copilot Feb 27, 2026
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Update NEWS.md for v0.6.0 with all PR changes
Copilot Feb 27, 2026
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23 changes: 23 additions & 0 deletions NEWS.md
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# autograph 0.6.0

## Package

- Updated logo

## Graphing

- Added `isolates` argument to `graphr()` for controlling how isolates are displayed
- `"legend"` (default) removes isolates from the graph but notes them in the legend
- `"caption"` removes isolates from the graph but notes them in the caption
- `"keep"` retains isolates in the graph as-is (closes #12)
- `graphr()` now dispatches to `graphs()` automatically when passed a list of graphs
- `graphs()` no longer requires `{patchwork}` to be loaded separately as it is now a regular import
- Changed node aesthetics from `color` to `fill`, using fillable shape codes (21–25) for nodes to support fill-based colour scales
- Consolidated all legend modifications into an internal `graph_legends()` helper
- Improved legend labelling: edge sign legend now labelled "Sign"; edge weight/width now labelled "Weight"/"Width"; node mode/shape legend now labelled "Mode"/"Shape"

## Layouts

- Replaced `{Rgraphviz}` (Bioconductor) with `igraph::layout_with_sugiyama` for Sugiyama/hierarchy layouts, removing the Bioconductor dependency
- Improved Sugiyama layout with dummy node insertion and barycenter crossing minimisation for better edge routing

# autograph 0.5.1

## Plotting
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