v2.1.2

[jhollway]

Description

Package

• Updated title/description text
• Updated README
  • Updated TOC to include new wrangling section
  • Added package migration note to README
• Updated startup messages with migration notesand links to {autograph}, {netrics}, and {migraph}
• Removed a set of defunct wrappers for moved/retired functions

Making

• Fixed reference formatting of DOI and citation text

Coercion

• Improved expect_nodes()/expect_ties() and introduces internal active-context helpers
• Fixed as_diffusion.igraph() to derive diffusion events from changelists

Manipulating

• Added filter_ties.igraph() and filter_ties.stocnet()
• Improved active context inference across mutate_nodes.stocnet(), mutate_ties.stocnet(), filter_nodes.stocnet(), and filter_ties.stocnet()
• Added bind_changes.igraph() and delegated 'tbl_graph' method to it

Modifying

• Added to_correlation.matrix() S3 method

Checklist:

• Documentation
  • DESCRIPTION file version is bumped by the appropriate increment (major, minor, patch)
  • Date in DESCRIPTION is correct
  • Longer functions are commented inline or broken down into helper functions to help debugging
• PR form
  • Title indicates expected version number
  • PR description above and the NEWS.md file are aligned
  • Description above itemizes changes under subsection titles, e.g. "## Data""
  • Closed, fixed, or related issues are referenced and explained in the description above, e.g. "Fixed #0 by adding A"

[codecov]

Codecov Report

❌ Patch coverage is 13.63636% with 38 lines in your changes missing coverage. Please review.
✅ Project coverage is 42.44%. Comparing base (80ddb95) to head (036e87e).
⚠️ Report is 2 commits behind head on main.

Files with missing lines	Patch %	Lines
R/manip_ties.R	26.66%	11 Missing ⚠️
R/modif_correlation.R	0.00%	11 Missing ⚠️
R/coerce_graph.R	0.00%	8 Missing ⚠️
R/manip_nodes.R	0.00%	8 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #143      +/-   ##
==========================================
- Coverage   42.70%   42.44%   -0.27%     
==========================================
  Files          36       36              
  Lines        4334     4368      +34     
==========================================
+ Hits         1851     1854       +3     
- Misses       2483     2514      +31     

☔ View full report in Codecov by Harness.
📢 Have feedback on the report? Share it here.

🚀 New features to boost your workflow:

• ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

[Copilot]

Pull request overview

This PR bumps {manynet} to v2.1.2 and updates docs/startup messaging to reflect the migration of visualisation and analytic functionality into {autograph} and {netrics} (via {migraph}), while extending several manipulation/coercion functions with new S3 methods and improved “active” context handling (notably for stocnet).

Changes:

• Documentation/startup updates about migrated functionality (README, startup tips), plus minor reference/DOI formatting cleanups.
• New/updated S3 methods and dispatch paths (filter_ties.igraph, filter_ties.stocnet, bind_changes.igraph, to_correlation.matrix) and new internal “active context” helpers used by stocnet node/tie verbs.
• Cleanup/removal of a set of defunct exports and corresponding Rd/NAMESPACE entries.

Reviewed changes

Copilot reviewed 13 out of 17 changed files in this pull request and generated 8 comments.

Show a summary per file

File	Description
README.Rmd	Adds migration note and updates TOC to include new wrangling section.
README.md	Regenerates README with the migration note and TOC update.
R/zzz.R	Updates startup tips, including notes about {autograph}/{netrics} and {migraph}.
R/reexports_classes.R	Refactors expect_nodes()/expect_ties() and introduces internal active-context helpers.
R/modif_correlation.R	Adds to_correlation.matrix() S3 method.
R/manynet-defunct.R	Removes a set of defunct wrappers for moved/retired functions.
R/manip_ties.R	Adds filter_ties.igraph and filter_ties.stocnet; wraps mutate_ties.stocnet in active context.
R/manip_nodes.R	Wraps filter_nodes.stocnet and mutate_nodes.stocnet in active context.
R/manip_changes.R	Splits bind_changes logic into an igraph method and delegates tbl_graph to it.
R/make_generate.R	Reference formatting tweaks (DOI and citation text).
R/coerce_graph.R	Adjusts as_diffusion.igraph() to derive diffusion events from changelists.
NAMESPACE	Registers new S3 methods and removes exports for deleted defunct functions.
man/manip_ties_num.Rd	Updates method availability table for new filter_ties methods.
man/manip_changes.Rd	Updates method availability table for new bind_changes.igraph.
man/make_stochastic.Rd	Keeps Rd in sync with reference formatting/DOI changes.
man/defunct.Rd	Removes aliases/entries for removed defunct functions.
DESCRIPTION	Bumps version to 2.1.2 and updates title/description text.

Files not reviewed (4)

• man/defunct.Rd: Generated file
• man/make_stochastic.Rd: Generated file
• man/manip_changes.Rd: Generated file
• man/manip_ties_num.Rd: Generated file

---

💡 Add Copilot custom instructions for smarter, more guided reviews. Learn how to get started.