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Welcome to the acheron wiki!

acheron is a command line tool for analysis of whole genome sequence (WGS) data using machine learning workflows.

Get going now by visiting Getting Started

An example workflow and pages to explain each, is as follows:

1. Download antimicrobial resistance (AMR) data. download
2. Download matching whole-genome sequence data. download
3. Turn AMR data into machine-learning ready labels. labels
4. Turn sequences into machine-learning ready features. features
5. Train machine-learning models. models
6. Use your models to make predictions on new data. predict

COMING SOON:

7. Annotate your genomes to see which genes are present and where. annotate
8. Identify regions of the genome your ML models have determined to be important using your annotations. identify
9. Build graphs and tables to display your results. summary