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1. mgnifam mgnifam Public

   Build protein families from sequence clusters by iterative HMM search over very large databases — streaming, deterministic, pyHMMER-based.

   Python 2

2. nf-core/proteinfamilies nf-core/proteinfamilies Public

   Generation and updating of protein families

   Nextflow 23 4

3. EBI-Metagenomics/mgnifams EBI-Metagenomics/mgnifams Public

   Pipeline to generate MGnifams --metagenomics derived protein families from MGnify Proteins database

   Nextflow 2 1

4. nf-core-module-dev nf-core-module-dev Public

   Agents and skills for creating/updating, testing, and documenting nf-core Nextflow modules

   Shell 13

5. Pavlopoulos-Lab/Arena3D Pavlopoulos-Lab/Arena3D Public

   Interactive 3D visualization of networks with multiple layers

   JavaScript 38 9

6. token-saviour token-saviour Public

   Agent skill that routes each coding task to the most token-efficient tool per layer: serena for code reads, rtk for command output, caveman for prose, Ponytail for generated code — −70% tokens meas…

   8