Skip to content
Open
Show file tree
Hide file tree
Changes from 3 commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Binary file added paper_figures/eval_results/.DS_Store
Binary file not shown.
53 changes: 53 additions & 0 deletions paper_figures/eval_results/all_results.txt
Original file line number Diff line number Diff line change
@@ -0,0 +1,53 @@
cellsam_general,0.9305001530212429,deepbacs,dec_14_anchor_new_FT_classic_continuation_3_alt_new_sh_v3/checkpoint002739.pth
cellsam_general,0.9114955475266577,Gendarme_BriFi,dec_14_anchor_new_FT_classic_continuation_3_alt_new_sh_v3/checkpoint002739.pth
cellsam_general,0.9899636661100489,YeaZ,dec_14_anchor_new_FT_classic_continuation_3_alt_new_sh_v3/checkpoint002739.pth
cellsam_general,0.9947094282646641,YeastNet,dec_14_anchor_new_FT_classic_continuation_3_alt_new_sh_v3/checkpoint002739.pth
cellsam_general,0.8937110327485136,dsb_fixed,dec_14_anchor_new_FT_classic_continuation_3_alt_new_sh_v3/checkpoint002739.pth
cellsam_general,0.8664808313235363,cellpose,dec_14_anchor_new_FT_classic_continuation_3_alt_new_sh_v3/checkpoint002739.pth
cellsam_general,0.8247822940812387,H_and_E,dec_14_anchor_new_FT_classic_continuation_3_alt_new_sh_v3/checkpoint002739.pth
cellsam_general,0.9257042959658932,ep_phase_microscopy_all,dec_14_anchor_new_FT_classic_continuation_3_alt_new_sh_v3/checkpoint002739.pth
cellsam_general,0.8943925241426757,tissuenet_wholecell,dec_14_anchor_new_FT_classic_continuation_3_alt_new_sh_v3/checkpoint002739.pth
cellsam_general,0.846632516582404,omnipose,dec_14_anchor_new_FT_classic_continuation_3_alt_new_sh_v3/checkpoint002739.pth
cellpose_general,0.91238774051133,deepbacs,./training_january_2025/cellpose_20241009_cp3_epoch_500_LR_0.2_WD_1e-5_size/cellpose_mixed_Max_0_no_CLAHE_no_pad_0shot_chan_3_chan2_2.pt
cellpose_general,0.8669610653765454,Gendarme_BriFi,./training_january_2025/cellpose_20241009_cp3_epoch_500_LR_0.2_WD_1e-5_size/cellpose_mixed_Max_0_no_CLAHE_no_pad_0shot_chan_3_chan2_2.pt
cellpose_general,0.9899964366211056,YeaZ,./training_january_2025/cellpose_20241009_cp3_epoch_500_LR_0.2_WD_1e-5_size/cellpose_mixed_Max_0_no_CLAHE_no_pad_0shot_chan_3_chan2_2.pt
cellpose_general,0.9860846500005519,YeastNet,./training_january_2025/cellpose_20241009_cp3_epoch_500_LR_0.2_WD_1e-5_size/cellpose_mixed_Max_0_no_CLAHE_no_pad_0shot_chan_3_chan2_2.pt
cellpose_general,0.8856022519784442,dsb_fixed,./training_january_2025/cellpose_20241009_cp3_epoch_500_LR_0.2_WD_1e-5_size/cellpose_mixed_Max_0_no_CLAHE_no_pad_0shot_chan_3_chan2_2.pt
cellpose_general,0.814113454154465,cellpose,./training_january_2025/cellpose_20241009_cp3_epoch_500_LR_0.2_WD_1e-5_size/cellpose_mixed_Max_0_no_CLAHE_no_pad_0shot_chan_3_chan2_2.pt
cellpose_general,0.7748214122716256,H_and_E,./training_january_2025/cellpose_20241009_cp3_epoch_500_LR_0.2_WD_1e-5_size/cellpose_mixed_Max_0_no_CLAHE_no_pad_0shot_chan_3_chan2_2.pt
cellpose_general,0.936851178675501,ep_phase_microscopy_all,./training_january_2025/cellpose_20241009_cp3_epoch_500_LR_0.2_WD_1e-5_size/cellpose_mixed_Max_0_no_CLAHE_no_pad_0shot_chan_3_chan2_2.pt
cellpose_general,0.8646821528359615,tissuenet_wholecell,./training_january_2025/cellpose_20241009_cp3_epoch_500_LR_0.2_WD_1e-5_size/cellpose_mixed_Max_0_no_CLAHE_no_pad_0shot_chan_3_chan2_2.pt
cellpose_general,0.8384279997907049,omnipose,./training_january_2025/cellpose_20241009_cp3_epoch_500_LR_0.2_WD_1e-5_size/cellpose_mixed_Max_0_no_CLAHE_no_pad_0shot_chan_3_chan2_2.pt
cellpose_cyto3,0.9139431317609098,deepbacs,
cellpose_cyto3,0.050923936631913455,Gendarme_BriFi,
cellpose_cyto3,0.989047961509327,YeaZ,
cellpose_cyto3,0.660566884954237,YeastNet,
cellpose_cyto3,0.888261465326483,dsb_fixed,
cellpose_cyto3,0.8432707674791837,cellpose,
cellpose_cyto3,0.45903535855855365,H_and_E,
cellpose_cyto3,0.814325403862586,ep_phase_microscopy_all,
cellpose_cyto3,0.8769010241057854,tissuenet_wholecell,
cellpose_cyto3,0.8956352047235195,omnipose,
cellsam/individual,0.8921574794507869,deepbacs,./training_january_2025/anchor_01_25_cont_3/deepbacs/checkpoint002739.pth
cellsam/individual,0.8421975934312929,Gendarme_BriFi,./training_january_2025/anchor_01_25_cont_3/Gendarme_BriFi/checkpoint002739.pth
cellsam/individual,0.9909187269704174,YeaZ,./training_january_2025/anchor_01_25_cont_3/YeaZ/checkpoint002739.pth
cellsam/individual,0.9638221147978361,YeastNet,./training_january_2025/anchor_01_25_cont_3/YeastNet/checkpoint002739.pth
cellsam/individual,0.8917925414259174,dsb_fixed,./training_january_2025/anchor_01_25_cont_3/dsb_fixed/checkpoint002739.pth
cellsam/individual,0.8867571609282048,cellpose,./training_january_2025/anchor_01_25_cont_3/cellpose/checkpoint002739.pth
cellsam/individual,0.7436987996709924,H_and_E,./training_january_2025/anchor_01_25_cont_3/H_and_E/checkpoint002739.pth
cellsam/individual,0.9259990604360172,ep_phase_microscopy_all,./training_january_2025/anchor_01_25_cont_3/ep_phase_microscopy_all/checkpoint002739.pth
cellsam/individual,0.8938937567036123,tissuenet_wholecell,./training_january_2025/anchor_01_25_cont_3/tissuenet_wholecell/checkpoint002739.pth
cellsam/individual,0.8130231630030896,omnipose,./training_january_2025/anchor_01_25_cont_3/omnipose/checkpoint002739.pth
cellpose/individual,0.9267827061903309,deepbacs,./training_january_2025/cellpose_20241009_cp3_epoch_500_LR_0.2_WD_1e-5_size/cellpose_deepbacs_Max_0_no_CLAHE_no_pad_0shot_chan_3_chan2_2.pt
cellpose/individual,0.9250379189518813,Gendarme_BriFi,./training_january_2025/cellpose_20241009_cp3_epoch_500_LR_0.2_WD_1e-5_size/cellpose_Gendarme_BriFi_Max_0_no_CLAHE_no_pad_0shot_chan_3_chan2_2.pt
cellpose/individual,0.9904068807065127,YeaZ,./training_january_2025/cellpose_20241009_cp3_epoch_500_LR_0.2_WD_1e-5_size/cellpose_YeaZ_Max_0_no_CLAHE_no_pad_0shot_chan_3_chan2_2.pt
cellpose/individual,0.9972082561573762,YeastNet,./training_january_2025/cellpose_20241009_cp3_epoch_500_LR_0.2_WD_1e-5_size/cellpose_YeastNet_Max_0_no_CLAHE_no_pad_0shot_chan_3_chan2_2.pt
cellpose/individual,0.8879976689450022,dsb_fixed,./training_january_2025/cellpose_20241009_cp3_epoch_500_LR_0.2_WD_1e-5_size/cellpose_dsb_fixed_Max_0_no_CLAHE_no_pad_0shot_chan_3_chan2_2.pt
cellpose/individual,0.8559837120640661,cellpose,./training_january_2025/cellpose_20241009_cp3_epoch_500_LR_0.2_WD_1e-5_size/cellpose_cellpose_Max_0_no_CLAHE_no_pad_0shot_chan_3_chan2_2.pt
cellpose/individual,0.8108379796652139,H_and_E,./training_january_2025/cellpose_20241009_cp3_epoch_500_LR_0.2_WD_1e-5_size/cellpose_H_and_E_Max_0_no_CLAHE_no_pad_0shot_chan_3_chan2_2.pt
cellpose/individual,0.9384103928725154,ep_phase_microscopy_all,./training_january_2025/cellpose_20241009_cp3_epoch_500_LR_0.2_WD_1e-5_size/cellpose_ep_phase_microscopy_all_Max_0_no_CLAHE_no_pad_0shot_chan_3_chan2_2.pt
cellpose/individual,0.8719401414468197,tissuenet_wholecell,./training_january_2025/cellpose_20241009_cp3_epoch_500_LR_0.2_WD_1e-5_size/cellpose_tissuenet_wholecell_Max_0_no_CLAHE_no_pad_0shot_chan_3_chan2_2.pt
cellpose/individual,0.9078500423037477,omnipose,./training_january_2025/cellpose_20241009_cp3_epoch_500_LR_0.2_WD_1e-5_size/cellpose_omnipose_Max_0_no_CLAHE_no_pad_0shot_chan_3_chan2_2.pt
cellsam/general,0.3812593514569176,LIVECell_good,./training_january_2025/cellpose_20241009_cp3_epoch_500_LR_0.2_WD_1e-5_size/cellpose_mixed_Max_0_no_CLAHE_no_pad_0shot_chan_3_chan2_2.pt
cellpose/general,0.4993479290305242,LIVECell_good,dec_14_anchor_new_FT_classic_continuation_3_alt_new_sh_v3/checkpoint002739.pth
cellsam/general_FS_10_FT,0.6340405966856812,LIVECell_good,anchor_01_25_cont_fewshot/livecell/checkpoint002799.pth
Binary file added paper_figures/eval_results/cellpose/.DS_Store
Binary file not shown.
22 changes: 22 additions & 0 deletions paper_figures/eval_results/cellpose/cyto3/Gendarme_BriFi.txt
Original file line number Diff line number Diff line change
@@ -0,0 +1,22 @@
0.046511628130615046
0
0.11764705588741058
0.08510638131929121
0
0
0
0
0.04255319281741335
0
0
0.07407406947495043
0
0.05128205409132683
0
0
0.08888888345824361
0.1702127699036575
0.1290322626232478
0.0769230749832809
0.09523809973209642
0.1428571334805623
51 changes: 51 additions & 0 deletions paper_figures/eval_results/cellpose/cyto3/H_and_E.txt
Original file line number Diff line number Diff line change
@@ -0,0 +1,51 @@
0.4543429855569468
0
0
0.6609687228810326
0.2277227650143385
0.6785714411193311
0.3346613511422967
0.09900989825271735
0.6852368422424262
0.6071428502110445
0
0.052631579643925466
0.09395973089201541
0.7340659230059277
0.6111110948552987
0.7559808284305024
0.40552995206109044
0.5
0.5
0.6101694799579866
0.799999985694886
0.8487804901671044
0.15231787641868996
0.5714285896748915
0.23880598344046525
0.6944444284795057
0.877714247150525
0.7299509613205949
0.8009101498315424
0.34558822261844896
0.7722222384505057
0.5934066134916399
0.4757281370848871
0.5806451506344678
0.2421340801167143
0.33684209978481433
0.27133478445061343
0
0.17910448927642375
0.52864583247121
0.5766525696670212
0.13535588754551195
0.16546762395314343
0.6212238151328466
0.8576554814542526
0.7368421171510655
0.48598128030788484
0.3799283360321402
0.4316546906324707
0.4977778052617632
0.47115387352332755
17 changes: 17 additions & 0 deletions paper_figures/eval_results/cellpose/cyto3/YeaZ.txt
Original file line number Diff line number Diff line change
@@ -0,0 +1,17 @@
0.9669210846417645
0.9927007316799917
0.9927007316799917
0.9890909060230637
0.9927007316799917
0.9927007316799917
0.9927007316799917
0.975609787371385
1.0
1.0
1.0
1.0
1.0
1.0
0.9836065126855801
0.9615384543918558
0.9735449421449519
15 changes: 15 additions & 0 deletions paper_figures/eval_results/cellpose/cyto3/YeastNet.txt
Original file line number Diff line number Diff line change
@@ -0,0 +1,15 @@
0.8713692982950488
0.955465529284614
0.9439999934485159
0.6956522246164285
0.5161290279784387
0.6400000145912174
0.6206896183181757
0.5333333458503083
0.72
0.7894736728179493
0.6666666948818838
0.731707285728433
0.347826075548261
0.4000000167638055
0.47619047619047616
68 changes: 68 additions & 0 deletions paper_figures/eval_results/cellpose/cyto3/cellpose.txt
Original file line number Diff line number Diff line change
@@ -0,0 +1,68 @@
0.9879517926933075
0.9200000077745187
0.9497206819610139
0.6562499790895909
0.9658536666596562
0.9642857010402379
0.8507463031646685
0.9473684078438459
0.9876543329067662
1.0
0.8056426230341819
0.8739496010359344
0.8834356088902846
0.7727272167446921
0.9821883113739499
0.9084248828909213
0.9497206370992176
0.9726027716211183
0.8705882570417581
0.9816849634499418
0.6985915715017899
0.9358974407956427
0.9450549332953966
0.958904090019358
0.9481481169505535
0.9090909627350878
0.7733333414611231
0.8674699134546803
0.9863013781398831
0.9313725415260596
0.6609686864021272
0.9249999630410921
0.9647887380502814
0.7576791827429572
0.7959183337378091
0.9725489866856418
0.9333333333333333
0.9146341662096779
0.928571396476619
0.9787234107340849
0.8143712899297619
0.8846153717776529
0.8750000084816877
0.584415609020637
0.6897589700664465
0.08163265744461762
0.7733333640756291
0.9230769032188779
0.8815166026981803
0.6857142951717362
0.8810572597902723
0.9803921377895521
0.9632353550345428
0.8999999867876373
0.701030909832141
1.0
0.9503916195484547
0.18264840727992798
0.6683416913137589
0.30555557707155717
0.5911950112241556
0.8812261153240968
0.9545454658752629
0.8837209535217626
0.8264462506832166
0.6448598577439649
1.0
0.8172042842701475
92 changes: 92 additions & 0 deletions paper_figures/eval_results/cellpose/cyto3/deepbacs.txt
Original file line number Diff line number Diff line change
@@ -0,0 +1,92 @@
0.9740260129414041
0.9461077964990694
0.9634145994450019
0.9828178644154958
0.9780219385278736
0.9518072183589474
0.9740260129414041
0.966216218297916
0.9704141953734347
0.9456522006039554
0.8983050836240545
0.982758656232735
0.9859154861471383
0.9600000546157373
0.9411765039998364
0.9705882370987565
0.8508771494080262
0.8767123092093491
0.8939394131164842
0.9397590017622741
0.9361701992255803
0.8999999867876373
0.9510489427222387
0.8989898862860846
0.9642857010402379
0.8604651098492643
0.9230769429377907
0.8620689892457017
0.8400000084936619
0.8387096614387459
0.9367088551221201
0.903225770300737
0.8837209459095077
0.8717948315477213
0.8266667194060207
0.8387096614387459
0.9367088551221201
0.8400000084936619
0.8266667194060207
0.9230769429377907
0.8837209459095077
0.8604651098492643
0.8620689892457017
0.903225770300737
0.8717948315477213
0.888888866548185
0.8549618870179944
0.7792208286818796
0.9718309332319834
0.7874015501184232
0.9052631696757453
0.9420289552718519
0.8817204206853241
0.8372092511103972
0.9436619593787547
0.9452054734052066
0.8999999867628022
0.9704141953734347
0.9461077964990694
0.8387096614387459
0.9510489427222387
0.966216218297916
0.9642857010402379
0.9859154861471383
0.8508771494080262
0.9230769429377907
0.9397590017622741
0.8939394131164842
0.9634145994450019
0.9740260129414041
0.8983050836240545
0.9456522006039554
0.9518072183589474
0.9740260129414041
0.9361701992255803
0.9411765039998364
0.8400000084936619
0.9600000546157373
0.8620689892457017
0.8266667194060207
0.9780219385278736
0.8717948315477213
0.982758656232735
0.8837209459095077
0.9367088551221201
0.8989898862860846
0.8604651098492643
0.9705882370987565
0.8999999867876373
0.9828178644154958
0.8767123092093491
0.903225770300737
56 changes: 56 additions & 0 deletions paper_figures/eval_results/cellpose/cyto3/dsb_fixed.txt
Original file line number Diff line number Diff line change
@@ -0,0 +1,56 @@
1.0
1.0
0.972973014334853
1.0
0.9285714651680356
0.883720922428016
0.9795917957735685
0.75
1.0
0.9009008401485741
0
1.0
1.0
1.0
0.666666695641146
0.9692307862606677
0.8437499717498822
1.0
0.8695652024901427
0.8214284940800427
1.0
0.7391303999861705
0.9473684078438459
1.0
0
0.8965517424560153
0.9512195213596125
1.0
0.8823529769392572
0.8965517195529584
0.8163265615788562
0.7878787560492254
0.727272720157389
1.0
0.8695652054929103
0.9333333333333333
0.9565217202011722
0.7843137112822453
0.9166666504390764
0.7789473545025627
0.9054053921000715
0.8695652024901427
1.0
0.8421053041360878
1.0
0.9933774488745317
0.9325153397760393
0.9870129579998315
0.9218750060555702
1.0
0.9714285574153976
0.97600003126801
0.9915966543143095
0.9516728063421225
0.9571788176249703
0.9725085706363973
Loading