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error on gzipped GFAs #4873

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error on gzipped GFAs #4873

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3 changes: 2 additions & 1 deletion src/subcommand/autoindex_main.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -103,7 +103,7 @@ void help_autoindex(char** argv) {
<< " -r, --ref-fasta FILE FASTA file with the reference sequence (may repeat)" << endl
<< " -v, --vcf FILE VCF file with sequence names matching -r (may repeat)" << endl
<< " -i, --ins-fasta FILE FASTA file with sequences of INS variants from -v" << endl
<< " -g, --gfa FILE GFA file to make a graph from" << endl
<< " -g, --gfa FILE GFA file to make a graph from (uncompressed)" << endl
<< " -G, --gbz FILE GBZ file to make indexes from" << endl
<< " -x, --tx-gff FILE GTF/GFF file with transcript annotations (may repeat)" << endl
<< " -H, --hap-tx-gff FILE GTF/GFF file with transcript annotations " << endl
Expand Down Expand Up @@ -247,6 +247,7 @@ int main_autoindex(int argc, char** argv) {
break;
case 'g':
gfa_name = require_exists(logger, optarg);
require_non_gzipped(logger, gfa_name);
break;
case 'G':
gbz_name = require_exists(logger, optarg);
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