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Update ip_2d_feature_extraction: Fix tests (add fp tolerance via regex) #189

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Merged
kostrykin merged 1 commit into from
Jan 5, 2026
Merged

Update ip_2d_feature_extraction: Fix tests (add fp tolerance via regex) #189

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2 changes: 1 addition & 1 deletion tools/2d_feature_extraction/2d_feature_extraction.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -172,7 +172,7 @@
<param name="intensities" value="input/input8_zyx.zarr"/>
<param name="features" value="area,area_convex,area_filled,axis_major_length,axis_minor_length,bbox,centroid,eccentricity,equivalent_diameter_area,euler_number,extent,inertia_tensor_eigvals,moments,moments_hu,orientation,perimeter,solidity,max_intensity,mean_intensity,min_intensity"/>
</conditional>
<output name="output" ftype="tabular" value="output/input9.tsv"/>
<output name="output" ftype="tabular" value="output/input9.tsv" compare="re_match"/>
<assert_stdout>
<has_line line='Skip feature that is not available for 3-D images: "eccentricity"'/>
<has_line line='Skip feature that is not available for 3-D images: "moments_hu"'/>
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2 changes: 1 addition & 1 deletion tools/2d_feature_extraction/test-data/output/input9.tsv
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Original file line number Diff line number Diff line change
@@ -1,2 +1,2 @@
area area_convex area_filled axis_major_length axis_minor_length bbox centroid equivalent_diameter_area euler_number extent inertia_tensor_eigvals moments perimeter solidity max_intensity mean_intensity min_intensity
10076.0 19452.0 10076.0 141.5372589111894 2.2275554354875524 [0, 0, 0, 2, 100, 100] [0.4791583961889639, 51.02153632393807, 55.51121476776498] 26.797637758267182 -1 0.5038 [1633.5242978752312, 1001.887883165562, 632.1326150314862] [[[10076.0, 559331.0, 39680985.0, 3075710795.0], [514093.0, 26719026.0, 1828782204.0, 137703070104.0], [34057349.0, 1680671976.0, 112117199682.0, 8307987945522.0], [2545051621.0, 120295106826.0, 7853098605480.0, 574813269790152.0]], [[4828.0, 278845.0, 20126387.0, 1574048161.0], [246982.0, 13386366.0, 940613844.0, 72136219614.0], [16531236.0, 855530424.0, 59225271630.0, 4513705336536.0], [1248767206.0, 62249971170.0, 4259056106556.0, 323493844156146.0]], [[4828.0, 278845.0, 20126387.0, 1574048161.0], [246982.0, 13386366.0, 940613844.0, 72136219614.0], [16531236.0, 855530424.0, 59225271630.0, 4513705336536.0], [1248767206.0, 62249971170.0, 4259056106556.0, 323493844156146.0]], [[4828.0, 278845.0, 20126387.0, 1574048161.0], [246982.0, 13386366.0, 940613844.0, 72136219614.0], [16531236.0, 855530424.0, 59225271630.0, 4513705336536.0], [1248767206.0, 62249971170.0, 4259056106556.0, 323493844156146.0]]] 10076 0.5179930084310097 999.8037382034536 523.4422397609023 0.11458563869848337
10076.0 19452.0 10076.0 141.5372[0-9]+ 2.2275[0-9]+ \[0, 0, 0, 2, 100, 100\] \[0.4791[0-9]+, 51.0215[0-9]+, 55.5112[0-9]+\] 26.7976[0-9]+ -1 0.5038 \[1633.5242[0-9]+, 1001.8878[0-9]+, 632.1326[0-9]+\] \[\[\[10076.0, 559331.0, 39680985.0, 3075710795.0\], \[514093.0, 26719026.0, 1828782204.0, 137703070104.0\], \[34057349.0, 1680671976.0, 112117199682.0, 8307987945522.0\], \[2545051621.0, 120295106826.0, 7853098605480.0, 574813269790152.0\]\], \[\[4828.0, 278845.0, 20126387.0, 1574048161.0\], \[246982.0, 13386366.0, 940613844.0, 72136219614.0\], \[16531236.0, 855530424.0, 59225271630.0, 4513705336536.0\], \[1248767206.0, 62249971170.0, 4259056106556.0, 323493844156146.0\]\], \[\[4828.0, 278845.0, 20126387.0, 1574048161.0\], \[246982.0, 13386366.0, 940613844.0, 72136219614.0\], \[16531236.0, 855530424.0, 59225271630.0, 4513705336536.0\], \[1248767206.0, 62249971170.0, 4259056106556.0, 323493844156146.0\]\], \[\[4828.0, 278845.0, 20126387.0, 1574048161.0\], \[246982.0, 13386366.0, 940613844.0, 72136219614.0\], \[16531236.0, 855530424.0, 59225271630.0, 4513705336536.0\], \[1248767206.0, 62249971170.0, 4259056106556.0, 323493844156146.0\]\]\] 10076 0.5179[0-9]+ 999.8037[0-9]+ 523.4422[0-9]+ 0.1145[0-9]+