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Split comma-separated accessions into individual values prior to running autofill #182

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Merged
alexhbnr merged 1 commit into from
Feb 6, 2026
Merged

Split comma-separated accessions into individual values prior to running autofill #182

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2 changes: 1 addition & 1 deletion amdirt/autofill/__init__.py
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Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,6 @@
from amdirt.validate.exceptions import NetworkError
import json

import sys
import pandas as pd

def run_autofill(accession, table_name=None, schema=None, dataset=None, sample_output=None, library_output=None, verbose=False, output_ena_table=None):
Expand Down Expand Up @@ -54,6 +53,7 @@ def run_autofill(accession, table_name=None, schema=None, dataset=None, sample_o
raise NetworkError("ENA API is unreachable")

query_dict = list()
accession = [aa for a in accession for aa in a.split(",")]
for a in accession:
query_res = ena.query(a, fields=[
"experiment_accession",
Expand Down