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add gpu utilisation for nextflow usage #10

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add gpu utilisation for nextflow usage #10

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11 changes: 8 additions & 3 deletions Scripts/gadi_nextflow_usage_v1.1.sh → Scripts/gadi_nextflow_usage_v1.2.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -31,7 +31,7 @@ if [[ ! -s "$TMPOUT" ]]; then
exit 1
fi

echo -e "Job_name\tHash\tLog_path\tExit_status\tService_units\tNCPUs_requested\tCPU_time_used(mins)\tCPU_efficiency\tMemory_requested\tMemory_used\tWalltime_requested\tWalltime_used(mins)\tJobFS_requested\tJobFS_used" > "$OUTPUT"
echo -e "Job_name\tHash\tLog_path\tExit_status\tService_units\tNCPUs_requested\tCPU_time_used(mins)\tCPU_efficiency\tNGPUs_requested\tGPU_utilisation\tGPU_memory_used\tMemory_requested\tMemory_used\tWalltime_requested\tWalltime_used(mins)\tJobFS_requested\tJobFS_used" > "$OUTPUT"

@calizilla calizilla Jul 22, 2026

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Suggest reordering so that all the CPU details (number, utilisation, memory requested and used) are together, then the 3 new GPU details after. This keeps the NA's if present clustered together


while read -r HASH JOBNAME; do
LOG=$(find "$WORKDIR" -type f -path "*/${HASH}*" -name ".command.log" | head -n 1)
Expand All @@ -58,6 +58,9 @@ while read -r HASH JOBNAME; do
cpu_time_used = "NA"
cpu_time_used_mins = "NA"
cpu_efficiency = "NA"
ngpus_requested = "NA"
gpu_utilisation = "NA"
gpu_memory_used = "NA"
memory_requested = "NA"
memory_used = "NA"
walltime_requested = "NA"
Expand All @@ -76,8 +79,10 @@ while read -r HASH JOBNAME; do
if ($0 ~ /Service Units/) service_units = $3
if ($0 ~ /NCPUs Requested/) ncpus_requested = $3
if ($0 ~ /CPU Time Used/) cpu_time_used = $7
if ($0 ~ /NGPUs Requested/) {ngpus_requested = $3; gpu_utilisation = $6}
if ($0 ~ /GPU Memory Used/) gpu_memory_used = $4
if ($0 ~ /Memory Requested/) memory_requested = $3
if ($0 ~ /Memory Used/) memory_used = $6
if ($0 ~ /Memory Used/ && $0 !~ /GPU Memory Used/) memory_used = $6
if ($0 ~ /Walltime Requested/) walltime_requested = $3
if ($0 ~ /Walltime Used/) walltime_used = $6
if ($0 ~ /JobFS Requested/) jobfs_requested = $3
Expand All @@ -96,7 +101,7 @@ while read -r HASH JOBNAME; do
cpu_efficiency = sprintf("%.4f", cpu_efficiency)
}
print jobname, hash, logfile, exit_status, service_units, ncpus_requested, cpu_time_used_mins, cpu_efficiency, memory_requested, memory_used, walltime_requested, walltime_used_mins, jobfs_requested, jobfs_used
print jobname, hash, logfile, exit_status, service_units, ncpus_requested, cpu_time_used_mins, cpu_efficiency, ngpus_requested, gpu_utilisation, gpu_memory_used, memory_requested, memory_used, walltime_requested, walltime_used_mins, jobfs_requested, jobfs_used

@calizilla calizilla Jul 22, 2026

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suggest reorder as per above comment

}' "$LOG"

done < "$TMPOUT" >> "$OUTPUT"
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