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Fixed issue 38 -- Migration to argparse #46

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Fixed issue 38 -- Migration to argparse #46

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156 changes: 51 additions & 105 deletions universalmutator/analyze.py
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Original file line number Diff line number Diff line change
Expand Up @@ -11,138 +11,84 @@
import random
import os
import py_compile
import argparse

def main():

isWindows = platform.system()
args = sys.argv

if ("--help" in args) or (len(sys.argv) < 3):
if len(sys.argv) < 3:
print("ERROR: analyze_mutants requires at least two arguments\n")
print("USAGE: analyze_mutants <sourcefile> <cmd> [--mutantDir <dir>] [--fromFile <mutantfile>]")
print(" <cmd> is command to execute to run tests; non-zero return indicates mutant killed")
print(" --mutantDir: directory with all mutants; defaults to current directory")
print(" --fromFile: file containing list of mutants to process; others ignored")
print(" --timeout <val>: change the timeout setting")
print(" --show: show mutants")
print(" --verbose: show mutants and output of analysis")
print(" --seed: random seed for shuffling of mutants")
print(" --noShuffle: do not randomize order of mutants")
print(" --resume: use existing killed.txt and notkilled.txt, resume mutation analysis")
print(" --prefix: add a prefix to killed.txt and notkilled.txt")
print(" --numMutants: run with specific number of mutants")
print(" --compileCommand: compile command to run in selecting mutants")
sys.exit(0)

verbose = "--verbose" in sys.argv
if verbose:
args.remove("--verbose")

showM = "--show" in sys.argv
if showM:
args.remove("--show")

resume = "--resume" in sys.argv
if resume:
args.remove("--resume")

noShuffle = "--noShuffle" in sys.argv
if noShuffle:
args.remove("--noShuffle")
parser = argparse.ArgumentParser()

prefix = None
try:
prefixpos = args.index("--prefix")
except ValueError:
prefixpos = -1
parser.add_argument("sourcefile", help="a file to mutate", metavar="<sourcefile>")

if prefixpos != -1:
prefix = args[prefixpos + 1]
args.remove("--prefix")
args.remove(prefix)
parser.add_argument("cmd", help="<cmd> is command to execute to run tests; non-zero return indicates mutant killed", metavar="<cmd>")

fromFile = None
try:
filepos = args.index("--fromFile")
except ValueError:
filepos = -1
parser.add_argument("--mutantDir", help ="directory with all mutants; defaults to current directory", nargs = 1, metavar="<dir>")

if filepos != -1:
fromFile = args[filepos + 1]
args.remove("--fromFile")
args.remove(fromFile)
parser.add_argument("--fromFile", help="file containing list of mutants to process; others ignored", nargs=1, metavar="<mutantfile>")

seed = None
try:
seedpos = args.index("--seed")
except ValueError:
seedpos = -1
parser.add_argument("--timeout",nargs=1, help = "change the timeout setting", metavar="val",type=int)

if seedpos != -1:
seed = args[seedpos + 1]
args.remove("--seed")
args.remove(seed)
seed = int(seed)
parser.add_argument("--show", action="store_true", help="show mutants")

timeout = 30
try:
topos = args.index("--timeout")
except ValueError:
topos = -1
parser.add_argument("--verbose", help="show mutants and output of analysis", action="store_true")

if topos != -1:
timeout = args[topos + 1]
args.remove("--timeout")
args.remove(timeout)
timeout = float(timeout)
parser.add_argument("--seed", help="random seed for shuffling of mutants", nargs=1, type=int, metavar="<integer seed>")

numMutants = -1
try:
nmpos = args.index("--numMutants")
except ValueError:
nmpos = -1
parser.add_argument("--noShuffle", help="do not randomize order of mutants", action="store_true")

if nmpos != -1:
numMutants = args[nmpos + 1]
args.remove("--numMutants")
args.remove(numMutants)
numMutants = int(numMutants)
parser.add_argument("--resume", help="use existing killed.txt and notkilled.txt, resume mutation analysis", action="store_true")

compileCommand = None
try:
ccmdpos = args.index("--compileCommand")
except ValueError:
ccmdpos = -1
parser.add_argument("--prefix", help="add a prefix to killed.txt and notkilled.txt", nargs=1, metavar="<prefix>")

parser.add_argument("--numMutants", help="run with specific number of mutants", nargs=1, metavar="<int>", type=int)

parser.add_argument("--compileCommand", help="compile command to run in selecting mutants", action="store_true")

args = parser.parse_args()

if ccmdpos != -1:
compileCommand = args[ccmdpos + 1]
args.remove("--compileCommand")
args.remove(compileCommand)
verbose = args.verbose

showM = args.show

resume = args.resume

noShuffle = args.noShuffle

prefix = args.prefix


fromFile = args.fromFile

seed = args.seed

timeout = args.timeout
if timeout == None:
timeout=30

numMutants = args.numMutants
if(numMutants == None):
numMutants = -1

compileCommand = args.compileCommand

onlyMutants = None

if fromFile is not None:
with open(fromFile, 'r') as file:
onlyMutants = file.read().split()

mdir = "."
try:
mdirpos = args.index("--mutantDir")
except ValueError:
mdirpos = -1

if mdirpos != -1:
mdir = args[mdirpos + 1]
args.remove("--mutantDir")
args.remove(mdir)
mdir= args.mutantDir
if mdir == None:
mdir = "."
if mdir[-1] != "/":
mdir += "/"

src = args[1]
tstCmd = [args[2]]
src = args.sourcefile
tstCmd = args.cmd
ignore = []
if len(args) > 3:
with open(sys.argv[3]) as file:
if args.fromfile != None:
with open(args.fromfile) as file:
for l in file:
ignore.append(l.split()[0])

Expand Down
49 changes: 24 additions & 25 deletions universalmutator/checkcov.py
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Original file line number Diff line number Diff line change
Expand Up @@ -2,38 +2,37 @@

import sys
import glob

import argparse

def main():

args = sys.argv

if ("--help" in args) or (len(sys.argv) < 4):
if len(sys.argv) < 4:
print("ERROR: check_covered requires at least three arguments\n")
print("USAGE: check_covered <sourcefile> <coverfile> <outfile> [--tstl] [--mutantDir directory]")
print(" --mutantDir: directory to put generated mutants in; defaults to current directory")
print(" --tstl: process <coverfile> that is output from TSTL internal report")
sys.exit(0)

mdir = "."
try:
mdirpos = args.index("--mutantDir")
except ValueError:
mdirpos = -1

if mdirpos != -1:
mdir = args[mdirpos + 1]
args.remove("--mutantDir")
args.remove(mdir)
parser = argparse.ArgumentParser()

parser.add_argument("sourcefile",nargs = 1, metavar="<sourcefile>")

parser.add_argument("coverfile",nargs = 1, metavar="<coverfile>")

parser.add_argument("outfile",nargs = 1, metavar="<outfile>")

parser.add_argument("--tstl", action="store_true", help = "process <coverfile> that is output from TSTL internal report")

parser.add_argument("--mutantDir", nargs=1, metavar="directory", help = "directory to put generated mutants in; defaults to current directory")

args = parser.parse_args()

mdir= args.mutantDir
if mdir == None:
mdir = "."
if mdir[-1] != "/":
mdir += "/"

src = args[1]
coverFile = args[2]
outFile = args[3]
src = args.sourcefile
coverFile = args.coverfile
outFile = args.outfile

tstl = "--tstl" in sys.argv
tstl = args.tstl
if tstl == None:
tstl = False

srcBase = src.split("/")[-1]
srcEnd = src.split(".")[-1]
Expand Down
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