docs + htcondor fix

MonteCarloMarginalizeCode/Code/RIFT/misc/dag_utils_generic.py

@@ -807,6 +807,16 @@ def _build_submit_dict(self, job):
             sub["executable"] = str(job.executable)
         args = self._build_argument_string(job, self._var_ref)
         if args:
+            # Condor "new arguments syntax": the entire argument string must
+            # be wrapped in double quotes.  glue.pipeline.CondorDAGJob's
+            # write_sub_file() does this, so the legacy implementation
+            # emitted `arguments = "..."`.  Without the outer quotes Condor
+            # falls back to the old arguments syntax, which parses brackets,
+            # commas, and embedded single-quoted tokens differently -- e.g.
+            # `'[0.2,0.2499]'` reaches the executable as a different argv
+            # string.  Re-wrap here so we exactly match the glue behaviour.
+            if not (args.startswith('"') and args.endswith('"')):
+                args = '"' + args + '"'
             sub["arguments"] = args
         if job.log_file:
             sub["log"] = job.log_file

docs/source/api_reference/simulation_manager/BaseManager.rst

@@ -0,0 +1,7 @@
+BaseManager API Reference
+===========================
+
+.. automodule:: RIFT.simulation_manager.BaseManager
+    :members:
+    :undoc-members:
+    :show-inheritance:

docs/source/api_reference/simulation_manager/CondorManager.rst

@@ -0,0 +1,7 @@
+CondorManager API Reference
+=============================
+
+.. automodule:: RIFT.simulation_manager.CondorManager
+    :members:
+    :undoc-members:
+    :show-inheritance:

docs/source/api_reference/simulation_manager/PBSManager.rst

@@ -0,0 +1,7 @@
+PBSManager API Reference
+==========================
+
+.. automodule:: RIFT.simulation_manager.PBSManager
+    :members:
+    :undoc-members:
+    :show-inheritance:

docs/source/api_reference/simulation_manager/SlurmManager.rst

@@ -0,0 +1,7 @@
+SlurmManager API Reference
+============================
+
+.. automodule:: RIFT.simulation_manager.SlurmManager
+    :members:
+    :undoc-members:
+    :show-inheritance:

docs/source/api_reference/simulation_manager/backends/gw_pe_synthetic.rst

@@ -0,0 +1,7 @@
+gw_pe_synthetic API Reference
+================================
+
+.. automodule:: RIFT.simulation_manager.backends.gw_pe_synthetic
+    :members:
+    :undoc-members:
+    :show-inheritance:

docs/source/api_reference/simulation_manager/backends/index.rst

@@ -0,0 +1,7 @@
+Simulation Manager Backends
+=============================
+
+.. toctree::
+   :maxdepth: 1
+
+   gw_pe_synthetic

docs/source/api_reference/simulation_manager/database.rst

@@ -0,0 +1,7 @@
+Simulation Database API Reference
+===================================
+
+.. automodule:: RIFT.simulation_manager.database
+    :members:
+    :undoc-members:
+    :show-inheritance: